- Base ruler
- No additional information available.
- Cytologic band
- Cytological bands on the polytene chromosomes
- DNA sequence
- No additional information available.
- DNA reverse compl.
- No additional information available.
- Gene Model
- Gene and mRNA (transcript) features (annotation DB ; Chado)
- Ortholog
- Orthologous_region
- Syntenic region
- Syntenic_region
- Gene span
- Gene span features (annotation DB ; Chado)
- mRNA
- Protein coding sequence (CDS or translation; annotation DB ; Chado)
- CDS
- Protein coding sequence (CDS or translation; annotation DB ; Chado)
- intron
- intron
- 5prime UTR
- five_prime_UTR
- 3prime UTR
- three_prime_UTR
- tRNA
- These are tRNA predictions made using Sean Eddy's tRNAscan program.
- Non-coding RNAs
- Non-coding RNAs: ncRNA snoRNA snRNA miscRNA
- Natural transposon
- Natural transposon (annotation DB ; Chado)
- Transgene insertion site
- Transgene insertion site (annotation DB ; Chado)
- polyA_site
- polyA_site (annotation DB ; Chado)
- point_mutation
- point_mutation (annotation DB ; Chado)
- protein_binding_site
- protein_binding_site (annotation DB ; Chado)
- rescue_fragment
- rescue_fragment (annotation DB ; Chado)
- mature_peptide
- mature_peptide (annotation DB ; Chado)
- enhancer
- enhancer (annotation DB ; Chado)
- aberration_junction
- aberration_junction (annotation DB ; Chado)
- regulatory_region
- regulatory_region (annotation DB ; Chado)
- sequence_variant
- sequence_variant (annotation DB ; Chado)
- DNA / RNA motif
- DNA_motif and RNA_motif (annotation DB ; Chado)
- DGC EST/cDNA
- DGC cDNA_clone (annotation DB ; Chado)
- EST
- EST (annotation DB ; Chado)
- Affy Oligo
- oligonucleotide (annotation DB ; Chado)
- Promoter prediction
- Transcription promoter prediction (annotation DB ; Chado)
- Repeat region
- repeat_region (annotation DB ; Chado)
- Genscan prediction
- Genscan (gene prediction) (annotation DB ; Chado)
- Genie prediction
- PieceGenie (gene prediction) (annotation DB ; Chado)
- HDP prediction
- HDP (annotation DB ; Chado)
- RNAiHDP prediction
- RNAiHDP (annotation DB ; Chado)
- tRNAscan prediction
- tRNAscan (tRNA prediction) (annotation DB ; Chado)
- D melanogaster protein
- match:blastx:aa_SPTR.dmel
- D pseudoobscura contigs
- match:tblastx:na_dpse
- Mosquito NA
- match:tblastx:na_agambiae
- Insect protein
- match:blastx:aa_SPTR.insect
- Insect dbEST
- match:tblastx:na_dbEST.insect
- Worm protein
- match:blastx:aa_SPTR.worm
- Yeast protein
- match:blastx:aa_SPTR.yeast
- Other invert. protein
- match:blastx:aa_SPTR.othinv
- Primate protein
- match:blastx:aa_SPTR.primate
- Vertebrate protein
- Blastx rodent, vertebrate aa_SPTR
- Plant protein
- match:blastx:aa_SPTR.plant
- Dmel genbank
- match:sim4:na_gb.dmel
- Dmel genbank (sim4tandem)
- match:sim4tandem:na_gb.dmel
- Dmel genbank tpa
- match:sim4:na_gb.tpa.dmel
- Dmel r32 transcript
- match:sim4:na_transcript_dmel_r32
- Dmel r31 transcript
- match:sim4:na_transcript_dmel_r31
- Dmel r2 transcript
- match:sim4:na_gadfly_dmel_r2
- Dros smallRNA
- match:sim4:na_smallRNA.dros
- Dmel ARGs
- match:sim4:na_ARGs.dros
- Dmel ARGs CDS
- match:sim4:na_ARGsCDS.dros
- Blast hit
- BLAST alignment hit
- Tiling BAC
- BAC (annotation DB ; Chado)
- GenBank Scaffold
- golden_path segment (annotation DB ; Chado)
- Deleted segments
- "Deleted segments"
- Duplicated segments
- "Duplicated segments"
- Inversion breakpoints
- "Inversion breakpoints"
- Transposition/translocation breakpoints
- "Transposition and translocation breakpoints"
- Other breakpoints
- "Other breakpoints"
- Transgene Insertions
- "Transgene Insertions"
- Orphan genes
- Genes mapped by cytology/recombination data only (not mapped to the
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Generic genome browser version 1.6