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Track Descriptions & Citations

Tracks Built into this Server

3-frame translation (forward)
No additional information available.

DNA/GC Content
No additional information available.

3-frame translation (reverse)
No additional information available.

Gene Span
Gene span features

mRNA
Transcript (mRNA/GeneModel; annotation DB ; Chado)

CDS
Protein coding sequence (CDS or translation; annotation DB ; Chado)

Ortholog (FlyBase)
orthologous_region

Syntenic region (FlyBase)
syntenic_region

Ortholog (GLEANR)
putative_ortholog

Cytologic band
No additional information available.

Pseudogene
No additional information available.

tRNA
No additional information available.

Non coding RNA
No additional information available.

Natural transposon
Natural transposon

Transgene insertion site
Transgene insertion site

EST
EST

Affy Oligo
oligonucleotide

polyA_site
polyA_site

point_mutation
point_mutation

protein_binding_site
protein_binding_site

rescue_fragment
rescue_fragment

mature_peptide
mature_peptide

enhancer
enhancer

aberration_junction
aberration_junction

regulatory_region
regulatory_region

sequence_variant
sequence_variant

DNA / RNA motif
DNA_motif and RNA_motif

Promoter prediction
Transcription promoter prediction

Repeat region
repeat_region

Augustus prediction
Augustus (gene prediction)

Genscan prediction
Genscan (gene prediction)

Genie prediction
PieceGenie (gene prediction)

Prosplign prediction
Prosplign (gene prediction)

Splign prediction
Splign cDNA

HDP prediction
HDP

RNAiHDP prediction
RNAiHDP

tRNAscan prediction
tRNAscan (tRNA prediction)

D melanogaster protein
blastx_dmel

D pseudoobscura contigs
tblastx_dpse

Mosquito NA
tblastx_agambiae

Insect protein
blastx_insect

Insect dbEST
tblastx_insect

Worm protein
blastx_worm

Yeast protein
blastx_yeast

Other invert. protein
blastx_othinv

Primate protein
blastx_primate

Vertebrate protein
blastx_othvert

Plant protein
blastx_plant

Dmel genbank
sim4_dmel

Dmel genbank (sim4tandem)
sim4tandem_dmel

Dmel r32 transcript
sim4_transcript_dmel_r32

Dmel r31 transcript
sim4_transcript_dmel_r31

Dmel r2 transcript
sim4_gadfly_dmel_r2

Dros smallRNA
sim4_smallRNA.dros

Dmel ARGs
sim4_ARGs.dros

Dmel ARGs CDS
sim4_ARGsCDS.dros

Blast hit
BLAST alignment hit

Tiling BAC
BAC

GenBank Scaffold
Scaffold


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