FlyBase .. Aberrations .. Anatomy .. BLAST .. Genes .. Annotation/Sequences .. Gene Products .. Maps .. People .. References .. Stocks .. Transgenes/Transposons .|. Help .. Searches .. News .. Site

FlyBase Report
Annotation of Gene CG3777

Summary: Gene CG3777 (CG3777 ,FBgn0024989) is located on X and has a length of 70502 nt on the genomic sequence. The cytologic location is 1A1--5 . The physical map boundaries are X:136,525..207,026. This gene has transcripts (and associated proteins): CG3777-RB (CG3777-PB), CG3777-RC (CG3777-PC), CG3777-RA (CG3777-PA), . The peptide validation status for the annotation of this gene is: --

Symbol CG3777
Annotation ID CG3777
Physical map X: 136,525..207,026
Cytogenetic map X: 1A1--5
Scaffold AE003417
Gene region length 70502 nt
Closest relatives InParanoid computed Orthology_Calls
Gene ID FBgn0024989
Feedback Fix annotation error
Cytoband:1A1 X:1..166952 Cytoband:1A2 X:166952..181001 Cytoband:1A3 X:181001..195050 Cytoband:1A4 X:195050..206465 Cytoband:1A5 X:206465..223202 Cytoband:1A6 X:223202..237251 Cytoband:1A7 X:237251..248666 Cytoband:1A8 X:248666..265404 Cytoband:1B1 X:265404..284776 Gene:SP71 X:63574..87173 Gene:CG2995 X:102829..110847 Gene:cin X:111774..115292 Gene:CG3777 X:136525..207026 Gene:CG12470 X:164506..165764 Gene:Or1a X:171945..173379 Gene:CG3038 X:100872..102664 Gene:CG13377 X:115155..120817 Gene:CG13376 X:123067..123648 Gene:ewg X:125343..136456 Gene:CG13375 X:143405..147163 Gene:CG32816 X:173843..191621 Gene model for CG3777
Gene region map (GBrowse)
Sequence:
in format:
for
Source: Release 4.3 Annotated Genome Sequence (Notes)
Available reports
Genome AnnotationSee also  Synopsis  |   Full report
Map locations  |   Similar genes & Sequences (85)  |   Synonyms (3)
SynonymsCK01670;    EG:125H10.1;    BEST:CK01670
Secondary IDsFBan0003777, FBgn0025695
Annotation notescomment=DGC clone RH61716 appears problematic: incomplete CDS
Gene Ontology associations --
DGC cDNA AT18705;  SD17974;  SD02026
EST EK193659;  RH07461;  RH14057;  RH59323;  HL04030;  RH40470;  RH72954;  RH61716;  LP06894;  RE69090;  RE68979;  LD38292;  HL07341;  EK180636;  EN06559;  EK229560;  EK266071;  EK248129;  SD17974;  EK209333;  EK126940;  EK247440;  EK126908;  EK105821;  EK050616;  EK212503;  EK257401;  EK216322;  EP08208;  EK089406;  EK097306;  EK101904;  EP12048;  CK00406;  EP07928;  SD07452;  EP06728;  EP07956;  EP06756;  EP17306;  EK139822;  EK157415;  EK100462;  EK112748;  EK245164;  EK236220;  EK216012;  GM02562;  EK193908;  EK194208;  EK281621;  EK217438;  EK100806;  EK277654;  EK191430;  EK111525;  AT18705;  bs71d01;  bs17h08;  bs23f08;  bs54g01;  bs28b06;  bs01c08;  bs07e10;  bs63d03;  bs64f09;  AT21754;  bs04g02;  bs43g04;  EC28651;  bs34f11;  EK047928;  SD25735;  SD02026;  CK01708;  CK02552;  EK087802;  SD14015;  EK106535;  EK299902;  EK060654
Affy Oligo 144341_at;  144342_at;  144042_at

Gene Annotation & Evidence
 
Transcript CG3777-RB
Length: 3354 nt   Get transcript sequence
Protein: CG3777-PB   (879 aa)   Get peptide translation
Annotation notes:validation_flag=transposon in gene protein_id=AAN09013
Synonyms:FlyBase:FBtr0070066;    FlyBase:FBpp0070065;    GB_protein:AAN09013.1;    GB_protein:AAN09013.2
Updated:20030221
Transcript CG3777-RC
Length: 3400 nt   Get transcript sequence
Protein: CG3777-PC   (879 aa)   Get peptide translation
Annotation notes:protein_id=AAN09014
Synonyms:FlyBase:FBtr0070068;    FlyBase:FBpp0070067;    GB_protein:AAN09014.2;    GB_protein:AAN09014.1
Updated:20030221
Transcript CG3777-RA
Length: 3374 nt   Get transcript sequence
Protein: CG3777-PA   (879 aa)   Get peptide translation
Annotation notes:protein_id=AAF45496 comment=based on homology to the obsolete gene model for Dmel CG3777-PB amino acids 24..696 in release 3.1 comment=within this sequence range, at least part of the putative ortholog of the D. melanogaster gene CG3777 lives
Synonyms:FlyBase:FBtr0070067;    FlyBase:FBpp0070066;    GB_protein:AAF45496.1;    GB_protein:AAF45496.2;    FlyBase:FBgn0077692;    FlyBase Annotation IDs:GA17682;    Dpse\GA17682
Updated:20030221
Other Features
none recorded


Send comments to us at flybase-help AT morgan.harvard.edu