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FlyBase BLAST

BLAST Database
MegaBLAST (blastn only)

Enter sequence below in FASTA format


BLAST database availability key:
  • A = Genome assembly (largest unit)
  • G = Annotated genes
  • P = Annotated proteins
  • I = Intergenic sequences
  • B = Syntenic blocks
  • T = Transposons
  • D = GenBank (NT)
  • D = GenBank EST (NT)
  • D = UniProt (AA)

Or load it from disk


Select species to search against

Clicking a node in the tree below selects all species under that node.

Note: The Dmel r5 option is an unannotated preview release. See here for more details.
More information about the CAF1 assemblies can be obtained from AAA.

Species

Advanced BLAST options

Output Format
Number of
Descriptions Alignments
(e.g. -G 7 -E 3)