Release 4.1 Summary Changes

new: 77
split: 4 r4.0 genes split to 10 new r4.1 genes
merged: 61 r4.0 genes merged to 28 new r4.1 genes
restored: 4 from all previous releases
deleted: 4 r4.0 genes
CR (RNA or pseudogene) to CG (protein-coding gene): 2
miscellaneous: 5

--------------------------------------------------------------------------------
new: 77
*a Acp53C14c
*u New annotation (CG33530) in release 4.1 of the genome annotation.
#
*a ban
*u New annotation (CR33559) in release 4.1 of the genome annotation.
#
*a CG33541
*u New annotation (CG33541) in release 4.1 of the genome annotation.
#
*a CG33552
*u New annotation (CG33552) in release 4.1 of the genome annotation.
#
*a CR33534
*u New annotation (CR33534) in release 4.1 of the genome annotation.
#
*a CR33535
*s tRNA gene: amino acid=Glu, anticodon=TTC.
*u New annotation (CR33535) in release 4.1 of the genome annotation.
#
*a CR33536
*u New annotation (CR33536) in release 4.1 of the genome annotation.
#
*a CR33538
*s tRNA gene: amino acid=Arg, anticodon=CCT.
*u New annotation (CR33538) in release 4.1 of the genome annotation.
#
*a CR33539
*s tRNA gene: amino acid=Trp, anticodon=CCA.
*u New annotation (CR33539) in release 4.1 of the genome annotation.
#
*a mir-2c
*u New annotation (CR33560) in release 4.1 of the genome annotation.
#
*a mir-4S
*u New annotation (CR33561) in release 4.1 of the genome annotation.
#
*a mir-8S
*u New annotation (CR33562) in release 4.1 of the genome annotation.
#
*a mir-9b
*u New annotation (CR33563) in release 4.1 of the genome annotation.
#
*a mir-9c
*u New annotation (CR33564) in release 4.1 of the genome annotation.
#
*a mir-10S
*u New annotation (CR33565) in release 4.1 of the genome annotation.
#
*a mir-13aS
*u New annotation (CR33566) in release 4.1 of the genome annotation.
#
*a mir-31a
*u New annotation (CR33567) in release 4.1 of the genome annotation.
#
*a mir-31b
*u New annotation (CR33568) in release 4.1 of the genome annotation.
#
*a mir-33
*u New annotation (CR33569) in release 4.1 of the genome annotation.
#
*a mir-79
*u New annotation (CR33570) in release 4.1 of the genome annotation.
#
*a mir-92a
*u New annotation (CR33571) in release 4.1 of the genome annotation.
#
*a mir-92b
*u New annotation (CR33572) in release 4.1 of the genome annotation.
#
*a mir-124
*u New annotation (CR33573) in release 4.1 of the genome annotation.
#
*a mir-133
*u New annotation (CR33574) in release 4.1 of the genome annotation.
#
*a mir-137
*u New annotation (CR33575) in release 4.1 of the genome annotation.
#
*a mir-184
*u New annotation (CR33576) in release 4.1 of the genome annotation.
#
*a mir-184S
*u New annotation (CR33577) in release 4.1 of the genome annotation.
#
*a mir-210
*u New annotation (CR33578) in release 4.1 of the genome annotation.
#
*a mir-219
*u New annotation (CR33579) in release 4.1 of the genome annotation.
#
*a mir-263a
*u New annotation (CR33580) in release 4.1 of the genome annotation.
#
*a mir-263b
*u New annotation (CR33581) in release 4.1 of the genome annotation.
#
*a mir-274
*u New annotation (CR33582) in release 4.1 of the genome annotation.
#
*a mir-275
*u New annotation (CR33583) in release 4.1 of the genome annotation.
#
*a mir-276a
*u New annotation (CR33584) in release 4.1 of the genome annotation.
#
*a mir-276aS
*u New annotation (CR33585) in release 4.1 of the genome annotation.
#
*a mir-276b
*u New annotation (CR33586) in release 4.1 of the genome annotation.
#
*a mir-276bS
*u New annotation (CR33587) in release 4.1 of the genome annotation.
#
*a mir-277
*u New annotation (CR33588) in release 4.1 of the genome annotation.
#
*a mir-278
*u New annotation (CR33589) in release 4.1 of the genome annotation.
#
*a mir-279
*u New annotation (CR33590) in release 4.1 of the genome annotation.
#
*a mir-280
*u New annotation (CR33591) in release 4.1 of the genome annotation.
#
*a mir-281-1
*u New annotation (CR33592) in release 4.1 of the genome annotation.
#
*a mir-281-2
*u New annotation (CR33593) in release 4.1 of the genome annotation.
#
*a mir-281a
*u New annotation (CR33594) in release 4.1 of the genome annotation.
#
*a mir-281aS
*u New annotation (CR33595) in release 4.1 of the genome annotation.
#
*a mir-281b
*u New annotation (CR33596) in release 4.1 of the genome annotation.
#
*a mir-281bS
*u New annotation (CR33597) in release 4.1 of the genome annotation.
#
*a mir-282
*u New annotation (CR33598) in release 4.1 of the genome annotation.
#
*a mir-283
*u New annotation (CR33599) in release 4.1 of the genome annotation.
#
*a mir-284
*u New annotation (CR33600) in release 4.1 of the genome annotation.
#
*a mir-285
*u New annotation (CR33601) in release 4.1 of the genome annotation.
#
*a mir-286
*u New annotation (CR33602) in release 4.1 of the genome annotation.
#
*a mir-287
*u New annotation (CR33603) in release 4.1 of the genome annotation.
#
*a mir-288
*u New annotation (CR33604) in release 4.1 of the genome annotation.
#
*a mir-289
*u New annotation (CR33605) in release 4.1 of the genome annotation.
#
*a mir-303
*u New annotation (CR33606) in release 4.1 of the genome annotation.
#
*a mir-304
*u New annotation (CR33607) in release 4.1 of the genome annotation.
#
*a mir-305
*u New annotation (CR33608) in release 4.1 of the genome annotation.
#
*a mir-306
*u New annotation (CR33609) in release 4.1 of the genome annotation.
#
*a mir-306S
*u New annotation (CR33610) in release 4.1 of the genome annotation.
#
*a mir-307
*u New annotation (CR33611) in release 4.1 of the genome annotation.
#
*a mir-308
*u New annotation (CR33612) in release 4.1 of the genome annotation.
#
*a mir-309
*u New annotation (CR33613) in release 4.1 of the genome annotation.
#
*a mir-310
*u New annotation (CR33614) in release 4.1 of the genome annotation.
#
*a mir-311
*u New annotation (CR33615) in release 4.1 of the genome annotation.
#
*a mir-312
*u New annotation (CR33616) in release 4.1 of the genome annotation.
#
*a mir-313
*u New annotation (CR33617) in release 4.1 of the genome annotation.
#
*a mir-314
*u New annotation (CR33618) in release 4.1 of the genome annotation.
#
*a mir-315
*u New annotation (CR33619) in release 4.1 of the genome annotation.
#
*a mir-316
*u New annotation (CR33620) in release 4.1 of the genome annotation.
#
*a mir-317
*u New annotation (CR33621) in release 4.1 of the genome annotation.
#
*a mir-318
*u New annotation (CR33622) in release 4.1 of the genome annotation.
#
*a mir-iab-4-3p
*u New annotation (CR33623) in release 4.1 of the genome annotation.
#
*a mir-iab-4-5p
*u New annotation (CR33624) in release 4.1 of the genome annotation.
#
*a snRNA:U7
*u New annotation (CR33504) in release 4.1 of the genome annotation.
#
*a tRNA:N5:60C
*s tRNA gene: amino acid=Asn, anticodon=GTT.
*u New annotation (CR33537) in release 4.1 of the genome annotation.
#
*a Vkor
*u New annotation (CG33544) in release 4.1 of the genome annotation.
#
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split: 4 r4.0 genes split to 10 new r4.1 genes

*a CG33505
*q Source for split of: CG10220
*q Annotation CG10220 split into CG33505 and CG33506 in release 4.1
*q of the genome annotation.
#
*a CG33506
*q Source for split of: CG10220
*q Annotation CG10220 split into CG33505 and CG33506 in release 4.1
*q of the genome annotation.
#
*a CG33509
*q Source for split of: CG14398
*q Annotation CG14398 split into CG33508 (ppk13), CG33509, CG33510
*q and CG33511 in release 4.1 of the genome annotation.
#
*a CG33510
*q Source for split of: CG14398
*q Annotation CG14398 split into CG33508 (ppk13), CG33509, CG33510
*q and CG33511 in release 4.1 of the genome annotation.
#
*a CG33511
*q Source for split of: CG14398
*q Annotation CG14398 split into CG33508 (ppk13), CG33509, CG33510
*q and CG33511 in release 4.1 of the genome annotation.
#
*a CG33524
*q Source for split of: CG33457
*q Release 3.2 annotation CG33457 split into CG33524 and CG33550 in
*q release 4.1 of the genome annotation.
#
*a CG33550
*q Source for split of: CG33457
*q Release 3.2 annotation CG33457 split into CG33524 and CG33550 in
*q release 4.1 of the genome annotation.
*q Release 4.1 annotation CG33550 contains sequences corresponding to
*q release 2 annotation CG16797.
#
*a lectin-37Da
*q Source for split of: CG9978
*q Annotation CG9978 split into CG33532 (lectin-37Da) and CG33533
*q (lectin-37Db) in release 4.1 of the genome annotation.
#
*a lectin-37Db
*q Source for split of: CG9978
*q Annotation CG9978 split into CG33532 (lectin-37Da) and CG33533
*q (lectin-37Db) in release 4.1 of the genome annotation.
#
*a ppk13
*q Source for split of: CG14398
*q Annotation CG14398 split into CG33508 (ppk13), CG33509, CG33510
*q and CG33511 in release 4.1 of the genome annotation.
#
--------------------------------------------------------------------------------
merged: 61 r4.0 genes merged to 28 new r4.1 genes

*a btsz
*q Annotations CG31306 and CG7343 merged as CG33555 (which corresponds
*q to btsz) in release 4.1 of the genome annotation.
#
*a CG32547
*q Annotations CG12610, CG15049 and CG15050 merged as CG32547 in
*q release 4.1 of the genome annotation.
#
*a CG33514
*q Annotations CG15017 and CG15018 merged as CG33514 in release 4.1 of
*q the genome annotation.
#
*a CG33515
*q Annotations CG15275 and CG15276 merged as CG33515 in release 4.1 of
*q the genome annotation.
#
*a CG33519
*q Annotations CG30171 and CG30175 merged as CG33519 in release 4.1 of
*q the genome annotation.
#
*a CG33523
*q Annotations CG10977 and CG32410 merged as CG33523 in release 4.1 of
*q the genome annotation.
#
*a CG33525
*q Annotations CG3878 and CG32535 merged as CG33525 in release 4.1 of
*q the genome annotation.
#
*a CG33528
*q Annotations CG6119 and CG6139 merged as CG33528 in release 4.1 of
*q the genome annotation.
#
*a CG33543
*q Annotations CG15354 and CG15355 merged as CG33543 in release 4.1 of
*q the genome annotation.
#
*a D2R
*q Annotations CG9569 and CG17004 merged as CG33517 (which corresponds
*q to D2R) in release 4.1 of the genome annotation.
#
*a Ddr
*q Annotations CG9488, CG13985, CG11573 and CG9490 merged as CG33531
*q (which corresponds to Ddr) in release 4.1 of the genome
*q annotation.
#
*a Doa
*q Annotations CG1658 and CG31049 merged as CG33553 (which corresponds
*q to Doa) in release 4.1 of the genome annotation.
#
*a dpr2
*q Annotations CG14067 and CG14068 merged as CG33507 (which corresponds
*q to dpr2) in release 4.1 of the genome annotation.
#
*a dpr3
*q Annotations CG15379, CG15380 and CG15381 merged as CG33516 (which
*q corresponds to dpr3) in release 4.1 of the genome annotation.
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*a dpr4
*q Annotations CG14707 and CG12593 merged as CG33512 (which corresponds
*q to dpr4) in release 4.1 of the genome annotation.
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*a form3
*q Annotations CG32384 and CG14824 merged as CG33556 (which corresponds
*q to form3) in release 4.1 of the genome annotation.
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*a gfzf
*q Annotations CG31329 and CG31492 merged as CG33546 (which corresponds
*q to gfzf) in release 4.1 of the genome annotation.
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*a Msp-300
*q Annotations CG18251 and CG31916 merged as CG33549 in release 4.1 of
*q the genome annotation.
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*a msta
*q Annotations CG32799 and CG32800 merged as CG33548 (which corresponds
*q to msta) in release 4.1 of the genome annotation.
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*a mun
*q Annotations CG17203 and CG17204 merged as CG33518 (which corresponds
*q to mun) in release 4.1 of the genome annotation.
#
*a nab
*u Annotations CG15000 and CG15001 merged as CG33545 (which corresponds
*u to nab) in release 4.1 of the genome annotation.
#
*a Nmdar2
*q Annotations CG14793 and CG14794 merged as CG33513 (which corresponds
*q to Nmdar2) in release 4.1 of the genome annotation.
#
*a PNUTS
*q Annotations CG4124 and CG31657 merged as CG33526 (which corresponds
*q to PNUTS) in release 4.1 of the genome annotation.
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*a Rapgap1
*q Annotations CG13789 and CG6682 merged as CG33529 (which corresponds
*q to Rapgap1) in release 4.1 of the genome annotation.
#
*a Rim
*q Annotations CG7301, CG7305 and CG7321 merged as CG33547 (which
*q corresponds to Rim) in release 4.1 of the genome annotation.
#
*a Rpb4
*u Annotations CG31318 and CG31237 merged as CG33520 in release 4.1 of
*u the genome annotation.
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*a scaf6
*q Annotations CG32168 and CG6615 merged as CG33522 (which corresponds
*q to scaf6) in release 4.1 of the genome annotation.
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*a upd3
*q Annotations CG5963 and CG15062 merged as CG33542 (which corresponds
*q to upd3) in release 4.1 of the genome annotation.
#
--------------------------------------------------------------------------------
restored: 4 from all previous releases

*a CG13376
*u Annotation CG13376 restored in release 4.1 of the genome annotation.
#
*a CG14300
*u Annotation CG14300 restored in release 4.1 of the genome
*u annotation.
#
*a tRNA:R:85Cb
*u Annotation CR31444 restored as CR33551 in release 4.1 of the genome
*u annotation.
#
*a CG33557
*u Annotation CG12648 restored as CG33557 in release 4.1 of the genome
*u annotation.
#
--------------------------------------------------------------------------------
deleted: 4 r4.0 genes

*a CG31227
*u Annotation CG31227 eliminated in release 4.1 of the genome
*u annotation.
#
*a CG32596
*u Annotation CG32596 eliminated in release 4.1 of the genome
*u annotation.
#
*a CG32734
*u Annotation CG32734 eliminated in release 4.1 of the genome
*u annotation.
#
*a CG33480
*u Annotation CG33480 eliminated in release 4.1 of the genome annotation.
#
--------------------------------------------------------------------------------
CR (RNA or pseudogene) to CG (protein-coding gene): 2

*a RpL41
*u Annotation CR30425 renamed CG30425 in release 4.1 of the genome annotation.
#
*a Gr22b
*u Annotation CR31931 renamed CG31931 in release 4.1 of the genome
*u annotation.
#
--------------------------------------------------------------------------------
miscellaneous: 5

*a CG33558
*q Annotation CG33352 renamed CG33558 in release 4.1 of the genome
*q annotation.
#
*a dpr
*u Release 4.1 annotation CG13439 corresponds to full length dpr (in
*u release 3.2, the CG13439 annotatation only corresponded to the 5'
*u end of dpr, as the 3' end was not in the release 3.2 sequenced
*u genome).
#
*a IFa
*q Release 4.1 annotation CG33527 corresponds to the 3' part of release
*q 2 annotation CG4681 (which was deleted in the release 3 version of
*q CG4681). Release 4.1 annotation CG33527 corresponds to IFa.
#
*a Nipped-A
*q Release 4.1 annotation CG33554 (which corresponds to Nipped-A)
*q contains sequences corresponding to both release 3.2 annotation
*q CG2905 and release 2 annotation CG10549.
#
*a CG33521
*q Release 4.1 annotation CG33521 contains sequences corresponding to
*q both release 3.2 annotation CG32015 and release 2 annotation
*q CG17467.
#